/Martin Hirst/PX0681_GGCTAC_3_lane_gembs/HCTVVCCXY_4_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 309696624 | 100.00 % | 154848312 | 100.00 % | 154848312 | 100.00 % |
| General Reads | 305604123 | 98.68 % | 153658506 | 99.23 % | 151945617 | 98.13 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 229324 | 0.07 % | 115133 | 0.07 % | 114191 | 0.07 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3863177 | 1.25 % | 1074673 | 0.69 % | 2788504 | 1.80 % |
| Bisulfite_reads C2T | 155447503 | 50.19 % | 78156889 | 50.47 % | 77290614 | 49.91 % |
| Bisulfite_reads G2A | 150385944 | 48.56 % | 75616750 | 48.83 % | 74769194 | 48.29 % |
| Concept | Value |
|---|---|
| Unique Fragments | 63457717 |
| Average Unique | 40.98 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 16323478932 | 34.91 % | 8372515612 | 35.81 % | 7950963320 | 34.00 % |
| Base Counts Overall C | 6594972268 | 14.10 % | 3529656056 | 15.10 % | 3065316212 | 13.11 % |
| Base Counts Overall G | 7354712099 | 15.73 % | 3435376716 | 14.69 % | 3919335383 | 16.76 % |
| Base Counts Overall T | 16176204464 | 34.59 % | 7887516946 | 33.73 % | 8288687518 | 35.45 % |
| Base Counts Overall N | 314822461 | 0.67 % | 157029782 | 0.67 % | 157792679 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9667345388354298 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 101508504 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 154848312 |
| 150 | 154848312 |
| Insert Size Histogram |
|---|
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