/Martin Hirst/PX0681_GGCTAC_3_lane_gembs/HCVC2CCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 232400426 | 100.00 % | 116200213 | 100.00 % | 116200213 | 100.00 % |
| General Reads | 227894151 | 98.06 % | 114892133 | 98.87 % | 113002018 | 97.25 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 168155 | 0.07 % | 84702 | 0.07 % | 83453 | 0.07 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4338120 | 1.87 % | 1223378 | 1.05 % | 3114742 | 2.68 % |
| Bisulfite_reads C2T | 115916284 | 49.88 % | 58433893 | 50.29 % | 57482391 | 49.47 % |
| Bisulfite_reads G2A | 112146022 | 48.26 % | 56542942 | 48.66 % | 55603080 | 47.85 % |
| Concept | Value |
|---|---|
| Unique Fragments | 47657977 |
| Average Unique | 41.01 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 12215004311 | 34.81 % | 6275710222 | 35.77 % | 5939294089 | 33.85 % |
| Base Counts Overall C | 5001984442 | 14.25 % | 2660411090 | 15.16 % | 2341573352 | 13.35 % |
| Base Counts Overall G | 5550811368 | 15.82 % | 2587424240 | 14.75 % | 2963387128 | 16.89 % |
| Base Counts Overall T | 12089304350 | 34.45 % | 5905398896 | 33.66 % | 6183905454 | 35.24 % |
| Base Counts Overall N | 235359855 | 0.67 % | 117287715 | 0.67 % | 118072140 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9665012355271285 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 75414139 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 116200213 |
| 150 | 116200213 |
| Insert Size Histogram |
|---|
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