/Martin Hirst/PX0681_GGCTAC_3_lane_gembs/HCVC2CCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 226351142 | 100.00 % | 113175571 | 100.00 % | 113175571 | 100.00 % |
| General Reads | 221585790 | 97.89 % | 111845538 | 98.82 % | 109740252 | 96.96 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 165070 | 0.07 % | 83294 | 0.07 % | 81776 | 0.07 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4600282 | 2.03 % | 1246739 | 1.10 % | 3353543 | 2.96 % |
| Bisulfite_reads C2T | 112694609 | 49.79 % | 56879784 | 50.26 % | 55814825 | 49.32 % |
| Bisulfite_reads G2A | 109056251 | 48.18 % | 55049048 | 48.64 % | 54007203 | 47.72 % |
| Concept | Value |
|---|---|
| Unique Fragments | 45928988 |
| Average Unique | 40.58 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 11885428376 | 34.77 % | 6107328642 | 35.74 % | 5778099734 | 33.81 % |
| Base Counts Overall C | 4869565994 | 14.25 % | 2596355739 | 15.19 % | 2273210255 | 13.30 % |
| Base Counts Overall G | 5419471384 | 15.86 % | 2523443446 | 14.77 % | 2896027938 | 16.95 % |
| Base Counts Overall T | 11774442521 | 34.45 % | 5747432688 | 33.63 % | 6027009833 | 35.27 % |
| Base Counts Overall N | 230114167 | 0.67 % | 114950706 | 0.67 % | 115163461 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9657058033551427 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 72813679 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 113175571 |
| 150 | 113175571 |
| Insert Size Histogram |
|---|
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