/Martin Hirst/PX0681_GGCTAC_3_lane_gembs

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SAMPLE PX0681_GGCTAC_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 768448192 100.00 % 384224096 100.00 % 384224096 100.00 %
General Reads 755084064 98.26 % 380396177 99.00 % 374687887 97.52 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 562549 0.07 % 283129 0.07 % 279420 0.07 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 12801579 1.67 % 3544790 0.92 % 9256789 2.41 %
Bisulfite_reads C2T 384058396 49.98 % 193470566 50.35 % 190587830 49.60 %
Bisulfite_reads G2A 371588217 48.36 % 187208740 48.72 % 184379477 47.99 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 157044682
Average Unique 40.87 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40423911619 34.84 % 20755554476 35.77 % 19668357143 33.90 %
Base Counts Overall C 16466522704 14.19 % 8786422885 15.14 % 7680099819 13.24 %
Base Counts Overall G 18324994851 15.79 % 8546244402 14.73 % 9778750449 16.85 %
Base Counts Overall T 40039951335 34.51 % 19540348530 33.68 % 20499602805 35.33 %
Base Counts Overall N 780296483 0.67 % 389268203 0.67 % 391028280 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9663631088466329
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 249736322



Mapping Quality

Mapping Quality Histogram
PX0681_GGCTAC_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
PX0681_GGCTAC_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HCTVVCCXY_4_2
HCVC2CCXY_7_2
HCVC2CCXY_8_2