/Martin Hirst/mapping_coverage/PX0681_GGCTAC_3_lane_gembs
BACK
SAMPLE PX0681_GGCTAC_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
703896048 |
100% |
98835419347 |
100% |
| Mapped |
694737431 |
98.70 % |
97461626797 |
98.61 % |
| Passed |
209863589 |
29.81 % |
24730550497 |
25.02 % |
| NotPassed |
484873842 |
68.88 % |
72731076300 |
73.59 % |
| |
|
|
|
|
| LowMAPQ |
309767132 |
44.01 % |
46465069800 |
47.01 % |
| MateUnmapped |
9158617 |
1.30 % |
1373792550 |
1.39 % |
| Duplicate |
52235937 |
7.42 % |
7835390550 |
7.93 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
2182418 |
0.31 % |
327362700 |
0.33 % |
| |
|
|
|
|
| NotCorrectlyAligned |
120688355 |
17.15 % |
18103253250 |
18.32 % |
| Unmapped |
9158617 |
1.30 % |
1373792550 |
1.39 % |
Base Level Counts
| Bases |
# |
% |
| Total |
31397440050 |
100% |
| Passed |
22990168642 |
73.22 % |
| Trimmed |
795888970 |
2.53 % |
| Clipped |
1567810242 |
4.99 % |
| Overlapping |
5099079311 |
16.24 % |
| LowQuality |
944492885 |
3.01 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |