/Martin Hirst/methylation/PX0681_GGCTAC_3_lane_gembs
BACK
SAMPLE PX0681_GGCTAC_3_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
25088936 |
12089449 |
48.19 % |
| NonRefCpG |
584677 |
24160 |
4.13 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6184618 |
13.60 % |
4002149 |
15.04 % |
366816 |
40.41 % |
22194 |
20.46 % |
| Intermediate (0.3-0.7) |
9454720 |
20.80 % |
3619451 |
13.60 % |
290445 |
31.99 % |
26894 |
24.79 % |
| Methylated (0.7-1) |
29823002 |
65.60 % |
18994538 |
71.36 % |
250556 |
27.60 % |
59392 |
54.75 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.810 |
|
0.850 |
|
0.410 |
|
0.740 |
|