/Martin Hirst/PX0821_ACCCAG_6_lane_gembs/HJ353CCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 300628642 | 100.00 % | 150314321 | 100.00 % | 150314321 | 100.00 % |
| General Reads | 289897461 | 96.43 % | 146539025 | 97.49 % | 143358436 | 95.37 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3399720 | 1.13 % | 1723822 | 1.15 % | 1675898 | 1.11 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7331461 | 2.44 % | 2051474 | 1.36 % | 5279987 | 3.51 % |
| Bisulfite_reads C2T | 149251473 | 49.65 % | 75435856 | 50.19 % | 73815617 | 49.11 % |
| Bisulfite_reads G2A | 144045708 | 47.91 % | 72826991 | 48.45 % | 71218717 | 47.38 % |
| Concept | Value |
|---|---|
| Unique Fragments | 64877786 |
| Average Unique | 43.16 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 16455986539 | 36.25 % | 8501313416 | 37.45 % | 7954673123 | 35.05 % |
| Base Counts Overall C | 6340133216 | 13.97 % | 3401984889 | 14.99 % | 2938148327 | 12.94 % |
| Base Counts Overall G | 6748167075 | 14.87 % | 3075364842 | 13.55 % | 3672802233 | 16.18 % |
| Base Counts Overall T | 15545503878 | 34.25 % | 7566600958 | 33.34 % | 7978902920 | 35.15 % |
| Base Counts Overall N | 305134234 | 0.67 % | 152198366 | 0.67 % | 152935868 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9676249924611765 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 100071940 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 150314321 |
| 150 | 150314321 |
| Insert Size Histogram |
|---|
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