/Martin Hirst/PX0821_ACCCAG_6_lane_gembs/HL2VKCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 262337292 | 100.00 % | 131168646 | 100.00 % | 131168646 | 100.00 % |
| General Reads | 252494631 | 96.25 % | 127725224 | 97.37 % | 124769407 | 95.12 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2976368 | 1.13 % | 1509393 | 1.15 % | 1466975 | 1.12 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6866293 | 2.62 % | 1934029 | 1.47 % | 4932264 | 3.76 % |
| Bisulfite_reads C2T | 130009583 | 49.56 % | 65761456 | 50.14 % | 64248127 | 48.98 % |
| Bisulfite_reads G2A | 125461416 | 47.82 % | 63473161 | 48.39 % | 61988255 | 47.26 % |
| Concept | Value |
|---|---|
| Unique Fragments | 57657271 |
| Average Unique | 43.96 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 14354404431 | 36.24 % | 7410075298 | 37.41 % | 6944329133 | 35.06 % |
| Base Counts Overall C | 5512485284 | 13.92 % | 2949417793 | 14.89 % | 2563067491 | 12.94 % |
| Base Counts Overall G | 5808139742 | 14.66 % | 2667608720 | 13.47 % | 3140531022 | 15.86 % |
| Base Counts Overall T | 13670307538 | 34.51 % | 6647100566 | 33.56 % | 7023206972 | 35.46 % |
| Base Counts Overall N | 267594097 | 0.68 % | 132263169 | 0.67 % | 135330928 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9697739249910381 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 88523611 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 131168646 |
| 150 | 131168646 |
| Insert Size Histogram |
|---|
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