/Martin Hirst/PX0821_ACCCAG_6_lane_gembs/HL2VKCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 270468476 | 100.00 % | 135234238 | 100.00 % | 135234238 | 100.00 % |
| General Reads | 260618244 | 96.36 % | 131699257 | 97.39 % | 128918987 | 95.33 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3061882 | 1.13 % | 1550993 | 1.15 % | 1510889 | 1.12 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6788350 | 2.51 % | 1983988 | 1.47 % | 4804362 | 3.55 % |
| Bisulfite_reads C2T | 134160695 | 49.60 % | 67788618 | 50.13 % | 66372077 | 49.08 % |
| Bisulfite_reads G2A | 129519431 | 47.89 % | 65461632 | 48.41 % | 64057799 | 47.37 % |
| Concept | Value |
|---|---|
| Unique Fragments | 59401124 |
| Average Unique | 43.92 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 14803740804 | 36.25 % | 7639092631 | 37.41 % | 7164648173 | 35.09 % |
| Base Counts Overall C | 5690425132 | 13.93 % | 3043428513 | 14.90 % | 2646996619 | 12.96 % |
| Base Counts Overall G | 5978297554 | 14.64 % | 2750392999 | 13.47 % | 3227904555 | 15.81 % |
| Base Counts Overall T | 14094288139 | 34.51 % | 6850983985 | 33.55 % | 7243304154 | 35.47 % |
| Base Counts Overall N | 273988247 | 0.67 % | 136471810 | 0.67 % | 137516437 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.969191359264912 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 91314173 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 135234238 |
| 150 | 135234238 |
| Insert Size Histogram |
|---|
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