/Martin Hirst/PX0821_ACCCAG_6_lane_gembs/HL2VKCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 270956592 | 100.00 % | 135478296 | 100.00 % | 135478296 | 100.00 % |
| General Reads | 260986744 | 96.32 % | 131896477 | 97.36 % | 129090267 | 95.28 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3069383 | 1.13 % | 1555111 | 1.15 % | 1514272 | 1.12 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6900465 | 2.55 % | 2026708 | 1.50 % | 4873757 | 3.60 % |
| Bisulfite_reads C2T | 134380031 | 49.59 % | 67908322 | 50.12 % | 66471709 | 49.06 % |
| Bisulfite_reads G2A | 129676096 | 47.86 % | 65543266 | 48.38 % | 64132830 | 47.34 % |
| Concept | Value |
|---|---|
| Unique Fragments | 59538421 |
| Average Unique | 43.95 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 14824280027 | 36.23 % | 7645009944 | 37.37 % | 7179270083 | 35.09 % |
| Base Counts Overall C | 5706201403 | 13.95 % | 3047517643 | 14.90 % | 2658683760 | 13.00 % |
| Base Counts Overall G | 5992921485 | 14.65 % | 2761786486 | 13.50 % | 3231134999 | 15.79 % |
| Base Counts Overall T | 14117019745 | 34.50 % | 6866546378 | 33.57 % | 7250473367 | 35.44 % |
| Base Counts Overall N | 274022732 | 0.67 % | 136362245 | 0.67 % | 137660487 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9693261116549811 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 91531345 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 135478296 |
| 150 | 135478296 |
| Insert Size Histogram |
|---|
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