/Martin Hirst/PX0821_ACCCAG_6_lane_gembs/HL2VKCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 271649138 | 100.00 % | 135824569 | 100.00 % | 135824569 | 100.00 % |
| General Reads | 261713524 | 96.34 % | 132234946 | 97.36 % | 129478578 | 95.33 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3077818 | 1.13 % | 1559005 | 1.15 % | 1518813 | 1.12 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6857796 | 2.52 % | 2030618 | 1.50 % | 4827178 | 3.55 % |
| Bisulfite_reads C2T | 134767456 | 49.61 % | 68087961 | 50.13 % | 66679495 | 49.09 % |
| Bisulfite_reads G2A | 130023886 | 47.86 % | 65705990 | 48.38 % | 64317896 | 47.35 % |
| Concept | Value |
|---|---|
| Unique Fragments | 59471854 |
| Average Unique | 43.79 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 14869170270 | 36.25 % | 7676713166 | 37.43 % | 7192457104 | 35.07 % |
| Base Counts Overall C | 5723618730 | 13.95 % | 3066050707 | 14.95 % | 2657568023 | 12.96 % |
| Base Counts Overall G | 6003690629 | 14.64 % | 2758282997 | 13.45 % | 3245407632 | 15.82 % |
| Base Counts Overall T | 14146321697 | 34.49 % | 6871253650 | 33.50 % | 7275068047 | 35.47 % |
| Base Counts Overall N | 276218512 | 0.67 % | 137209399 | 0.67 % | 139009113 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9692653156791744 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 91483462 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 135824569 |
| 150 | 135824569 |
| Insert Size Histogram |
|---|
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