/Martin Hirst/PX0821_ACCCAG_6_lane_gembs

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SAMPLE PX0821_ACCCAG_6_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1644835526 100.00 % 822417763 100.00 % 822417763 100.00 %
General Reads 1584676203 96.34 % 800933326 97.39 % 783742877 95.30 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 18630402 1.13 % 9440493 1.15 % 9189909 1.12 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 41528921 2.52 % 12043944 1.46 % 29484977 3.59 %
Bisulfite_reads C2T 815912479 49.60 % 412345314 50.14 % 403567165 49.07 %
Bisulfite_reads G2A 787394126 47.87 % 398028505 48.40 % 389365621 47.34 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 360040364
Average Unique 43.78 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 90006971218 36.24 % 46454899803 37.41 % 43552071415 35.07 %
Base Counts Overall C 34627039640 13.94 % 18530603072 14.92 % 16096436568 12.96 %
Base Counts Overall G 36491769138 14.69 % 16756802839 13.49 % 19734966299 15.89 %
Base Counts Overall T 85575882186 34.45 % 41612741484 33.51 % 43963140702 35.40 %
Base Counts Overall N 1668502244 0.67 % 830035015 0.67 % 838467229 0.68 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9691051532584395
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 553822158



Mapping Quality

Mapping Quality Histogram
PX0821_ACCCAG_6_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
PX0821_ACCCAG_6_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HL2VKCCXY_6_2
HL2VKCCXY_7_2
HJ353CCXY_8_2
HL2VKCCXY_4_2
HL2VKCCXY_8_2
HL2VKCCXY_5_2