/Martin Hirst/mapping_coverage/PX0821_ACCCAG_6_lane_gembs
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SAMPLE PX0821_ACCCAG_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1530738443 |
100% |
211488176110 |
100% |
| Mapped |
1505605599 |
98.36 % |
207718249510 |
98.22 % |
| Passed |
584474422 |
38.18 % |
69548572960 |
32.89 % |
| NotPassed |
921131177 |
60.18 % |
138169676550 |
65.33 % |
| |
|
|
|
|
| LowMAPQ |
655850624 |
42.85 % |
98377593600 |
46.52 % |
| MateUnmapped |
25132844 |
1.64 % |
3769926600 |
1.78 % |
| Duplicate |
55143482 |
3.60 % |
8271522300 |
3.91 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
20732148 |
1.35 % |
3109822200 |
1.47 % |
| |
|
|
|
|
| NotCorrectlyAligned |
189404923 |
12.37 % |
28410738450 |
13.43 % |
| Unmapped |
25132844 |
1.64 % |
3769926600 |
1.78 % |
Base Level Counts
| Bases |
# |
% |
| Total |
87620865450 |
100% |
| Passed |
64330384896 |
73.42 % |
| Trimmed |
2273717596 |
2.59 % |
| Clipped |
3550301414 |
4.05 % |
| Overlapping |
14521991076 |
16.57 % |
| LowQuality |
2944470468 |
3.36 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |