/Martin Hirst/methylation/PX0821_ACCCAG_6_lane_gembs
BACK
SAMPLE PX0821_ACCCAG_6_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26526578 |
22018695 |
83.01 % |
| NonRefCpG |
202652 |
51529 |
25.43 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5619878 |
10.80 % |
4811128 |
10.41 % |
99343 |
27.99 % |
16736 |
10.67 % |
| Intermediate (0.3-0.7) |
6040315 |
11.61 % |
4415506 |
9.55 % |
84803 |
23.89 % |
26736 |
17.04 % |
| Methylated (0.7-1) |
40361759 |
77.59 % |
37002790 |
80.04 % |
170767 |
48.12 % |
113410 |
72.29 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.890 |
|
0.900 |
|
0.670 |
|
0.850 |
|