{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 103418910, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 100948868, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.61, 
            "paired": 103418910, 
            "paired_qc_failed": 0, 
            "read1": 51709455, 
            "read1_qc_failed": 0, 
            "read2": 51709455, 
            "read2_qc_failed": 0, 
            "paired_properly": 99753345, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.46, 
            "with_itself": 100189679, 
            "with_itself_qc_failed": 0, 
            "singletons": 759189, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.73, 
            "diff_chroms": 59340, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 127861076, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 126069958, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.6, 
            "paired": 127861076, 
            "paired_qc_failed": 0, 
            "read1": 63930538, 
            "read1_qc_failed": 0, 
            "read2": 63930538, 
            "read2_qc_failed": 0, 
            "paired_properly": 122750247, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 96.0, 
            "with_itself": 125397302, 
            "with_itself_qc_failed": 0, 
            "singletons": 672656, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.53, 
            "diff_chroms": 127073, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 42761082, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1431184, 
            "paired_opt_dupes": 4681, 
            "dupes_pct": 0.033469
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 54205503, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 466424, 
            "paired_opt_dupes": 4293, 
            "dupes_pct": 0.008605
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 42752283, 
            "distinct_read_pairs": 41321507, 
            "one_read_pair": 39936633, 
            "two_read_pair": 1342031, 
            "NRF": 0.966533, 
            "PBC1": 0.966485, 
            "PBC2": 29.758354
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 54190280, 
            "distinct_read_pairs": 53725300, 
            "one_read_pair": 53274643, 
            "two_read_pair": 442720, 
            "NRF": 0.991419, 
            "PBC1": 0.991612, 
            "PBC2": 120.334846
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 82659796, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 82659796, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 82659796, 
            "paired_qc_failed": 0, 
            "read1": 41329898, 
            "read1_qc_failed": 0, 
            "read2": 41329898, 
            "read2_qc_failed": 0, 
            "paired_properly": 82659796, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 82659796, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 107478158, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 107478158, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 107478158, 
            "paired_qc_failed": 0, 
            "read1": 53739079, 
            "read1_qc_failed": 0, 
            "read2": 53739079, 
            "read2_qc_failed": 0, 
            "paired_properly": 107478158, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 107478158, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 166545, 
        "Np": 0, 
        "N_opt": 166545, 
        "N_consv": 166545, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 125, 
            "corr_est_frag_len": 0.188359754633115, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2025619, 
            "argmin_corr": 1500, 
            "min_corr": 0.179397, 
            "NSC": 1.04996, 
            "RSC": 0.38691
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.374535629242
        }, 
        "rep1-pr1": {
            "FRiP": 0.34321864536
        }, 
        "rep1-pr2": {
            "FRiP": 0.34318428069
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.314210652719
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.225063086004, 
            "auc": 0.495529659165, 
            "ch_div": 0.103930298626, 
            "elbow_pt": 0.0, 
            "jsd": 0.713579412664, 
            "syn_auc": 0.501615215821, 
            "syn_elbow_pt": 0.224327667024, 
            "syn_jsd": 0.373398473402
        }
    ]
}
