/CEMT/mapping_coverage/A75623_1_lane_gembs
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SAMPLE A75623_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
924350570 |
100% |
119448326602 |
100% |
| Mapped |
916105733 |
99.11 % |
118211601052 |
98.96 % |
| Passed |
719698468 |
77.86 % |
88750511302 |
74.30 % |
| NotPassed |
196407265 |
21.25 % |
29461089750 |
24.66 % |
| |
|
|
|
|
| LowMAPQ |
103317030 |
11.18 % |
15497554500 |
12.97 % |
| MateUnmapped |
8244837 |
0.89 % |
1236725550 |
1.04 % |
| Duplicate |
81205740 |
8.79 % |
12180861000 |
10.20 % |
| BadOrientation |
72 |
0.00 % |
10800 |
0.00 % |
| LargeInsertSize |
6912 |
0.00 % |
1036800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11877511 |
1.28 % |
1781626650 |
1.49 % |
| Unmapped |
8244837 |
0.89 % |
1236725550 |
1.04 % |
Base Level Counts
| Bases |
# |
% |
| Total |
107944732200 |
100% |
| Passed |
82397941008 |
76.33 % |
| Trimmed |
3011582162 |
2.79 % |
| Clipped |
329184154 |
0.30 % |
| Overlapping |
18865036744 |
17.48 % |
| LowQuality |
3340988132 |
3.10 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |