/CEMT/methylation/A75623_1_lane_gembs

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SAMPLE A75623_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27168893 22404691 82.46 %
NonRefCpG 269612 192493 71.40 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A75623_1_lane_gembs_coverage_refCpG.png ./IMG//A75623_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A75623_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A75623_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A75623_1_lane_gembs_quality_refcpg.png ./IMG//A75623_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A75623_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7046385 13.12 % 4928813 10.33 % 62983 12.24 % 33023 7.97 %
Intermediate (0.3-0.7) 12536500 23.34 % 10522924 22.06 % 129383 25.15 % 94708 22.84 %
Methylated (0.7-1) 34120579 63.54 % 32258146 67.61 % 322140 62.61 % 286848 69.19 %
Median Methylation 0.800 0.820 0.790 0.820