/CEMT/mapping_coverage/A75624_1_lane_gembs
BACK
SAMPLE A75624_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
927591106 |
100% |
123078271531 |
100% |
| Mapped |
918785845 |
99.05 % |
121757482381 |
98.93 % |
| Passed |
715106395 |
77.09 % |
91205564881 |
74.10 % |
| NotPassed |
203679450 |
21.96 % |
30551917500 |
24.82 % |
| |
|
|
|
|
| LowMAPQ |
102255006 |
11.02 % |
15338250900 |
12.46 % |
| MateUnmapped |
8805261 |
0.95 % |
1320789150 |
1.07 % |
| Duplicate |
88947304 |
9.59 % |
13342095600 |
10.84 % |
| BadOrientation |
44 |
0.00 % |
6600 |
0.00 % |
| LargeInsertSize |
8536 |
0.00 % |
1280400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12468560 |
1.34 % |
1870284000 |
1.52 % |
| Unmapped |
8805261 |
0.95 % |
1320789150 |
1.07 % |
Base Level Counts
| Bases |
# |
% |
| Total |
107255629050 |
100% |
| Passed |
84336546399 |
78.63 % |
| Trimmed |
3043309855 |
2.84 % |
| Clipped |
333499003 |
0.31 % |
| Overlapping |
15716565166 |
14.65 % |
| LowQuality |
3825708627 |
3.57 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |