/CEMT/methylation/A75624_1_lane_gembs

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SAMPLE A75624_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27222279 23057853 84.70 %
NonRefCpG 268425 194561 72.48 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A75624_1_lane_gembs_coverage_refCpG.png ./IMG//A75624_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A75624_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A75624_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A75624_1_lane_gembs_quality_refcpg.png ./IMG//A75624_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A75624_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6564140 12.20 % 4827134 9.93 % 58217 11.39 % 30042 7.22 %
Intermediate (0.3-0.7) 12075760 22.44 % 10307553 21.19 % 124085 24.27 % 91003 21.86 %
Methylated (0.7-1) 35175997 65.36 % 33497454 68.88 % 329039 64.35 % 295231 70.92 %
Median Methylation 0.810 0.830 0.800 0.830