/CEMT/A77954_1_lane_gembs

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SAMPLE A77954_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1103930858 100.00 % 551965429 100.00 % 551965429 100.00 %
General Reads 991541103 89.82 % 500276417 90.64 % 491264686 89.00 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8124492 0.74 % 4090854 0.74 % 4033638 0.73 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 104265263 9.44 % 47598158 8.62 % 56667105 10.27 %
Bisulfite_reads C2T 508342222 46.05 % 256387155 46.45 % 251955067 45.65 %
Bisulfite_reads G2A 491323373 44.51 % 247980116 44.93 % 243343257 44.09 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 440255673
Average Unique 79.76 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 63387036421 38.03 % 25606550401 30.72 % 37780486020 45.33 %
Base Counts Overall C 19258173084 11.55 % 2150787589 2.58 % 17107385495 20.53 %
Base Counts Overall G 18791961581 11.27 % 16494473057 19.79 % 2297488524 2.76 %
Base Counts Overall T 64138463638 38.48 % 38536576964 46.24 % 25601886674 30.72 %
Base Counts Overall N 1117924834 0.67 % 558391768 0.67 % 559533066 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9931492927852027
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 483076271



Mapping Quality

Mapping Quality Histogram
A77954_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A77954_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
H5235CCXY_8_2
HGJ2KCCXY_7_2