/CEMT/mapping_coverage/A77954_1_lane_gembs
BACK
SAMPLE A77954_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
931928533 |
100% |
119888954273 |
100% |
| Mapped |
920230659 |
98.74 % |
118134273173 |
98.54 % |
| Passed |
756651061 |
81.19 % |
93597333473 |
78.07 % |
| NotPassed |
163579598 |
17.55 % |
24536939700 |
20.47 % |
| |
|
|
|
|
| LowMAPQ |
92238582 |
9.90 % |
13835787300 |
11.54 % |
| MateUnmapped |
11697874 |
1.26 % |
1754681100 |
1.46 % |
| Duplicate |
59727261 |
6.41 % |
8959089150 |
7.47 % |
| BadOrientation |
54 |
0.00 % |
8100 |
0.00 % |
| LargeInsertSize |
6244 |
0.00 % |
936600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11607457 |
1.25 % |
1741118550 |
1.45 % |
| Unmapped |
11697874 |
1.26 % |
1754681100 |
1.46 % |
Base Level Counts
| Bases |
# |
% |
| Total |
113488272450 |
100% |
| Passed |
87063437396 |
76.72 % |
| Trimmed |
3222905161 |
2.84 % |
| Clipped |
292245890 |
0.26 % |
| Overlapping |
19598693087 |
17.27 % |
| LowQuality |
3310990916 |
2.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |