/CEMT/methylation/A77954_1_lane_gembs

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SAMPLE A77954_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27094273 23358045 86.21 %
NonRefCpG 264628 199489 75.38 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A77954_1_lane_gembs_coverage_refCpG.png ./IMG//A77954_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A77954_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A77954_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A77954_1_lane_gembs_quality_refcpg.png ./IMG//A77954_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A77954_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4996457 9.33 % 2899102 5.99 % 36730 7.31 % 12264 2.95 %
Intermediate (0.3-0.7) 6621941 12.37 % 5265063 10.88 % 70785 14.09 % 43590 10.50 %
Methylated (0.7-1) 41932609 78.30 % 40249452 83.14 % 394978 78.60 % 359412 86.55 %
Median Methylation 0.890 0.900 0.880 0.900