/Martin Hirst/PX0720_GGCTAC_10_lane_gembs/HCVFLCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 203333276 | 100.00 % | 101666638 | 100.00 % | 101666638 | 100.00 % |
| General Reads | 198548141 | 97.65 % | 100214586 | 98.57 % | 98333555 | 96.72 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1155720 | 0.57 % | 582072 | 0.57 % | 573648 | 0.56 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3629415 | 1.78 % | 869980 | 0.86 % | 2759435 | 2.71 % |
| Bisulfite_reads C2T | 101488029 | 49.91 % | 51220103 | 50.38 % | 50267926 | 49.44 % |
| Bisulfite_reads G2A | 98215832 | 48.30 % | 49576555 | 48.76 % | 48639277 | 47.84 % |
| Concept | Value |
|---|---|
| Unique Fragments | 40546556 |
| Average Unique | 39.88 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 10916765651 | 35.56 % | 5688484106 | 37.05 % | 5228281545 | 34.06 % |
| Base Counts Overall C | 4365289892 | 14.22 % | 2375414122 | 15.47 % | 1989875770 | 12.96 % |
| Base Counts Overall G | 4700332134 | 15.31 % | 2105789981 | 13.72 % | 2594542153 | 16.90 % |
| Base Counts Overall T | 10514734465 | 34.25 % | 5079702875 | 33.09 % | 5435031590 | 35.40 % |
| Base Counts Overall N | 206202534 | 0.67 % | 102271254 | 0.67 % | 103931280 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9724476663628376 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 65831827 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 101666638 |
| 150 | 101666638 |
| Insert Size Histogram |
|---|
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