/Martin Hirst/PX0720_GGCTAC_10_lane_gembs/HF7JYCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 171831574 | 100.00 % | 85915787 | 100.00 % | 85915787 | 100.00 % |
| General Reads | 167443274 | 97.45 % | 84590996 | 98.46 % | 82852278 | 96.43 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 974306 | 0.57 % | 491568 | 0.57 % | 482738 | 0.56 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3413994 | 1.99 % | 833223 | 0.97 % | 2580771 | 3.00 % |
| Bisulfite_reads C2T | 85570420 | 49.80 % | 43223730 | 50.31 % | 42346690 | 49.29 % |
| Bisulfite_reads G2A | 82847160 | 48.21 % | 41858834 | 48.72 % | 40988326 | 47.71 % |
| Concept | Value |
|---|---|
| Unique Fragments | 33507344 |
| Average Unique | 39.00 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9272562595 | 35.74 % | 4829626810 | 37.23 % | 4442935785 | 34.25 % |
| Base Counts Overall C | 3673311994 | 14.16 % | 2020905402 | 15.58 % | 1652406592 | 12.74 % |
| Base Counts Overall G | 3994754891 | 15.40 % | 1772026200 | 13.66 % | 2222728691 | 17.13 % |
| Base Counts Overall T | 8831761036 | 34.04 % | 4263791299 | 32.87 % | 4567969737 | 35.21 % |
| Base Counts Overall N | 174177158 | 0.67 % | 86934126 | 0.67 % | 87243032 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9702413878879487 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 54679994 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 85915787 |
| 150 | 85915787 |
| Insert Size Histogram |
|---|
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