/Martin Hirst/PX0720_GGCTAC_10_lane_gembs/HF7JYCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 174536934 | 100.00 % | 87268467 | 100.00 % | 87268467 | 100.00 % |
| General Reads | 170139888 | 97.48 % | 85940987 | 98.48 % | 84198901 | 96.48 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 995116 | 0.57 % | 502217 | 0.58 % | 492899 | 0.56 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3401930 | 1.95 % | 825263 | 0.95 % | 2576667 | 2.95 % |
| Bisulfite_reads C2T | 86955749 | 49.82 % | 43916520 | 50.32 % | 43039229 | 49.32 % |
| Bisulfite_reads G2A | 84179255 | 48.23 % | 42526684 | 48.73 % | 41652571 | 47.73 % |
| Concept | Value |
|---|---|
| Unique Fragments | 34158275 |
| Average Unique | 39.14 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9418239637 | 35.74 % | 4909512443 | 37.26 % | 4508727194 | 34.22 % |
| Base Counts Overall C | 3727306234 | 14.14 % | 2050906619 | 15.56 % | 1676399615 | 12.72 % |
| Base Counts Overall G | 4055009403 | 15.39 % | 1795118393 | 13.62 % | 2259891010 | 17.15 % |
| Base Counts Overall T | 8976866523 | 34.06 % | 4333699430 | 32.89 % | 4643167093 | 35.24 % |
| Base Counts Overall N | 177655237 | 0.67 % | 88301632 | 0.67 % | 89353605 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9713210906868006 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 55734031 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 87268467 |
| 150 | 87268467 |
| Insert Size Histogram |
|---|
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