/Martin Hirst/PX0720_GGCTAC_10_lane_gembs/HF7JYCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 174446666 | 100.00 % | 87223333 | 100.00 % | 87223333 | 100.00 % |
| General Reads | 170181845 | 97.56 % | 85902943 | 98.49 % | 84278902 | 96.62 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 995232 | 0.57 % | 501672 | 0.58 % | 493560 | 0.57 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3269589 | 1.87 % | 818718 | 0.94 % | 2450871 | 2.81 % |
| Bisulfite_reads C2T | 86966528 | 49.85 % | 43895818 | 50.33 % | 43070710 | 49.38 % |
| Bisulfite_reads G2A | 84210549 | 48.27 % | 42508797 | 48.74 % | 41701752 | 47.81 % |
| Concept | Value |
|---|---|
| Unique Fragments | 34208323 |
| Average Unique | 39.22 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9416861283 | 35.75 % | 4904707867 | 37.24 % | 4512153416 | 34.26 % |
| Base Counts Overall C | 3727495614 | 14.15 % | 2048656431 | 15.55 % | 1678839183 | 12.75 % |
| Base Counts Overall G | 4046348167 | 15.36 % | 1795707716 | 13.63 % | 2250640451 | 17.09 % |
| Base Counts Overall T | 8973315411 | 34.07 % | 4333450788 | 32.90 % | 4639864623 | 35.23 % |
| Base Counts Overall N | 177426091 | 0.67 % | 88200481 | 0.67 % | 89225610 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9718011845432699 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 55844735 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 87223333 |
| 150 | 87223333 |
| Insert Size Histogram |
|---|
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