/Martin Hirst/PX0720_GGCTAC_10_lane_gembs/HF7JYCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 176260082 | 100.00 % | 88130041 | 100.00 % | 88130041 | 100.00 % |
| General Reads | 171576825 | 97.34 % | 86799178 | 98.49 % | 84777647 | 96.20 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1002554 | 0.57 % | 507408 | 0.58 % | 495146 | 0.56 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3680703 | 2.09 % | 823455 | 0.93 % | 2857248 | 3.24 % |
| Bisulfite_reads C2T | 87689269 | 49.75 % | 44358965 | 50.33 % | 43330304 | 49.17 % |
| Bisulfite_reads G2A | 84890110 | 48.16 % | 42947621 | 48.73 % | 41942489 | 47.59 % |
| Concept | Value |
|---|---|
| Unique Fragments | 34354551 |
| Average Unique | 38.98 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9515463343 | 35.75 % | 4956511190 | 37.25 % | 4558952153 | 34.26 % |
| Base Counts Overall C | 3762185330 | 14.14 % | 2069773632 | 15.55 % | 1692411698 | 12.72 % |
| Base Counts Overall G | 4098591043 | 15.40 % | 1814389921 | 13.63 % | 2284201122 | 17.16 % |
| Base Counts Overall T | 9058481162 | 34.03 % | 4377594804 | 32.90 % | 4680886358 | 35.17 % |
| Base Counts Overall N | 180551504 | 0.68 % | 89366644 | 0.67 % | 91184860 | 0.69 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9714296071750221 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 56042332 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 88130041 |
| 150 | 88130041 |
| Insert Size Histogram |
|---|
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