/Martin Hirst/PX0720_GGCTAC_10_lane_gembs/HHFYJCCXY_4_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 183441868 | 100.00 % | 91720934 | 100.00 % | 91720934 | 100.00 % |
| General Reads | 177417596 | 96.72 % | 90271218 | 98.42 % | 87146378 | 95.01 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1024337 | 0.56 % | 519749 | 0.57 % | 504588 | 0.55 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4999935 | 2.73 % | 929967 | 1.01 % | 4069968 | 4.44 % |
| Bisulfite_reads C2T | 90634266 | 49.41 % | 46110055 | 50.27 % | 44524211 | 48.54 % |
| Bisulfite_reads G2A | 87807667 | 47.87 % | 44680912 | 48.71 % | 43126755 | 47.02 % |
| Concept | Value |
|---|---|
| Unique Fragments | 35109760 |
| Average Unique | 38.28 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9819699176 | 35.45 % | 5137705867 | 37.10 % | 4681993309 | 33.81 % |
| Base Counts Overall C | 3938551495 | 14.22 % | 2151926354 | 15.54 % | 1786625141 | 12.90 % |
| Base Counts Overall G | 4241237346 | 15.31 % | 1886531926 | 13.62 % | 2354705420 | 17.00 % |
| Base Counts Overall T | 9514802465 | 34.35 % | 4580817829 | 33.07 % | 4933984636 | 35.62 % |
| Base Counts Overall N | 185431586 | 0.67 % | 92879058 | 0.67 % | 92552528 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9708213002119189 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 56442542 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 91720934 |
| 150 | 91720934 |
| Insert Size Histogram |
|---|
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