/Martin Hirst/PX0720_GGCTAC_10_lane_gembs/HHFYJCCXY_5_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 183508422 | 100.00 % | 91754211 | 100.00 % | 91754211 | 100.00 % |
| General Reads | 177040322 | 96.48 % | 90302101 | 98.42 % | 86738221 | 94.53 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1025250 | 0.56 % | 522296 | 0.57 % | 502954 | 0.55 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5442850 | 2.97 % | 929814 | 1.01 % | 4513036 | 4.92 % |
| Bisulfite_reads C2T | 90443534 | 49.29 % | 46126616 | 50.27 % | 44316918 | 48.30 % |
| Bisulfite_reads G2A | 87622038 | 47.75 % | 44697781 | 48.71 % | 42924257 | 46.78 % |
| Concept | Value |
|---|---|
| Unique Fragments | 34885348 |
| Average Unique | 38.02 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9809785344 | 35.40 % | 5143336040 | 37.12 % | 4666449304 | 33.68 % |
| Base Counts Overall C | 3942476196 | 14.23 % | 2158002868 | 15.58 % | 1784473328 | 12.88 % |
| Base Counts Overall G | 4260710953 | 15.38 % | 1882405070 | 13.59 % | 2378305883 | 17.17 % |
| Base Counts Overall T | 9511050780 | 34.32 % | 4578310329 | 33.04 % | 4932740451 | 35.60 % |
| Base Counts Overall N | 185748449 | 0.67 % | 92831554 | 0.67 % | 92916895 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9709789195141664 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 56033126 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 91754211 |
| 150 | 91754211 |
| Insert Size Histogram |
|---|
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