/Martin Hirst/PX0720_GGCTAC_10_lane_gembs/HHFYJCCXY_6_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 170572716 | 100.00 % | 85286358 | 100.00 % | 85286358 | 100.00 % |
| General Reads | 164571206 | 96.48 % | 83803196 | 98.26 % | 80768010 | 94.70 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 946948 | 0.56 % | 480936 | 0.56 % | 466012 | 0.55 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5054562 | 2.96 % | 1002226 | 1.18 % | 4052336 | 4.75 % |
| Bisulfite_reads C2T | 84087109 | 49.30 % | 42813649 | 50.20 % | 41273460 | 48.39 % |
| Bisulfite_reads G2A | 81431045 | 47.74 % | 41470483 | 48.62 % | 39960562 | 46.85 % |
| Concept | Value |
|---|---|
| Unique Fragments | 32301893 |
| Average Unique | 37.87 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9122664909 | 35.42 % | 4776601906 | 37.09 % | 4346063003 | 33.75 % |
| Base Counts Overall C | 3662924927 | 14.22 % | 2011575324 | 15.62 % | 1651349603 | 12.82 % |
| Base Counts Overall G | 3899671029 | 15.14 % | 1746270919 | 13.56 % | 2153400110 | 16.72 % |
| Base Counts Overall T | 8898327602 | 34.55 % | 4257529271 | 33.06 % | 4640798331 | 36.04 % |
| Base Counts Overall N | 172891649 | 0.67 % | 86262638 | 0.67 % | 86629011 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9697940039336498 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 51747296 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 85286358 |
| 150 | 85286358 |
| Insert Size Histogram |
|---|
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