/Martin Hirst/PX0720_GGCTAC_10_lane_gembs/HHFYJCCXY_7_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 181117716 | 100.00 % | 90558858 | 100.00 % | 90558858 | 100.00 % |
| General Reads | 174345191 | 96.26 % | 89117510 | 98.41 % | 85227681 | 94.11 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 1013353 | 0.56 % | 517227 | 0.57 % | 496126 | 0.55 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5759172 | 3.18 % | 924121 | 1.02 % | 4835051 | 5.34 % |
| Bisulfite_reads C2T | 89073482 | 49.18 % | 45520840 | 50.27 % | 43552642 | 48.09 % |
| Bisulfite_reads G2A | 86285062 | 47.64 % | 44113897 | 48.71 % | 42171165 | 46.57 % |
| Concept | Value |
|---|---|
| Unique Fragments | 34307343 |
| Average Unique | 37.88 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9675196784 | 35.38 % | 5078738118 | 37.14 % | 4596458666 | 33.61 % |
| Base Counts Overall C | 3892184324 | 14.23 % | 2126342706 | 15.55 % | 1765841618 | 12.91 % |
| Base Counts Overall G | 4221374576 | 15.44 % | 1856666613 | 13.58 % | 2364707963 | 17.29 % |
| Base Counts Overall T | 9375778406 | 34.28 % | 4521056579 | 33.06 % | 4854721827 | 35.50 % |
| Base Counts Overall N | 184241026 | 0.67 % | 91583542 | 0.67 % | 92657484 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9706759754998059 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 55004758 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 90558858 |
| 150 | 90558858 |
| Insert Size Histogram |
|---|
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