/Martin Hirst/PX0720_GGCTAC_10_lane_gembs/HHFYJCCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 173298684 | 100.00 % | 86649342 | 100.00 % | 86649342 | 100.00 % |
| General Reads | 166997752 | 96.36 % | 85205555 | 98.33 % | 81792197 | 94.39 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 970573 | 0.56 % | 494538 | 0.57 % | 476035 | 0.55 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5330359 | 3.08 % | 949249 | 1.10 % | 4381110 | 5.06 % |
| Bisulfite_reads C2T | 85317306 | 49.23 % | 43522243 | 50.23 % | 41795063 | 48.23 % |
| Bisulfite_reads G2A | 82651019 | 47.69 % | 42177850 | 48.68 % | 40473169 | 46.71 % |
| Concept | Value |
|---|---|
| Unique Fragments | 32849897 |
| Average Unique | 37.91 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9263314561 | 35.40 % | 4862712139 | 37.17 % | 4400602422 | 33.63 % |
| Base Counts Overall C | 3726597579 | 14.24 % | 2038510403 | 15.58 % | 1688087176 | 12.90 % |
| Base Counts Overall G | 4025267564 | 15.38 % | 1773922202 | 13.56 % | 2251345362 | 17.21 % |
| Base Counts Overall T | 8977042049 | 34.31 % | 4321607044 | 33.03 % | 4655435005 | 35.58 % |
| Base Counts Overall N | 175879531 | 0.67 % | 87298854 | 0.67 % | 88580677 | 0.68 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9701968204551934 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 52647057 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 86649342 |
| 150 | 86649342 |
| Insert Size Histogram |
|---|
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