/Martin Hirst/mapping_coverage/PX0720_GGCTAC_10_lane_gembs
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SAMPLE PX0720_GGCTAC_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1678734111 |
100% |
237025420085 |
100% |
| Mapped |
1644262493 |
97.95 % |
231854677385 |
97.82 % |
| Passed |
553975621 |
33.00 % |
68311646585 |
28.82 % |
| NotPassed |
1090286872 |
64.95 % |
163543030800 |
69.00 % |
| |
|
|
|
|
| LowMAPQ |
703516016 |
41.91 % |
105527402400 |
44.52 % |
| MateUnmapped |
34471618 |
2.05 % |
5170742700 |
2.18 % |
| Duplicate |
60450606 |
3.60 % |
9067590900 |
3.83 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
17315064 |
1.03 % |
2597259600 |
1.10 % |
| |
|
|
|
|
| NotCorrectlyAligned |
309005186 |
18.41 % |
46350777900 |
19.56 % |
| Unmapped |
34471618 |
2.05 % |
5170742700 |
2.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
83035163850 |
100% |
| Passed |
62467253647 |
75.23 % |
| Trimmed |
2170444917 |
2.61 % |
| Clipped |
4316017594 |
5.20 % |
| Overlapping |
10407499671 |
12.53 % |
| LowQuality |
3673948021 |
4.42 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |