/Martin Hirst/methylation/PX0720_GGCTAC_10_lane_gembs
BACK
SAMPLE PX0720_GGCTAC_10_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26576882 |
20585164 |
77.46 % |
| NonRefCpG |
395800 |
137150 |
34.65 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6893744 |
13.41 % |
5392392 |
12.40 % |
190921 |
27.18 % |
37005 |
10.51 % |
| Intermediate (0.3-0.7) |
7177528 |
13.96 % |
4713442 |
10.84 % |
154441 |
21.99 % |
52411 |
14.88 % |
| Methylated (0.7-1) |
37333525 |
72.63 % |
33379627 |
76.76 % |
356998 |
50.83 % |
262738 |
74.61 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.870 |
|
0.890 |
|
0.710 |
|
0.880 |
|