{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 81068154, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 80383536, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 99.16, 
            "paired": 81068154, 
            "paired_qc_failed": 0, 
            "read1": 40534077, 
            "read1_qc_failed": 0, 
            "read2": 40534077, 
            "read2_qc_failed": 0, 
            "paired_properly": 79954076, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 98.63, 
            "with_itself": 80083880, 
            "with_itself_qc_failed": 0, 
            "singletons": 299656, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.37, 
            "diff_chroms": 22335, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 246240780, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 242844912, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.62, 
            "paired": 246240780, 
            "paired_qc_failed": 0, 
            "read1": 123120390, 
            "read1_qc_failed": 0, 
            "read2": 123120390, 
            "read2_qc_failed": 0, 
            "paired_properly": 234365124, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 95.18, 
            "with_itself": 241490311, 
            "with_itself_qc_failed": 0, 
            "singletons": 1354601, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.55, 
            "diff_chroms": 217706, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 36650097, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1517691, 
            "paired_opt_dupes": 2263, 
            "dupes_pct": 0.04141
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 104468009, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 1214525, 
            "paired_opt_dupes": 3857, 
            "dupes_pct": 0.011626
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 36640370, 
            "distinct_read_pairs": 35123074, 
            "one_read_pair": 33843347, 
            "two_read_pair": 1127439, 
            "NRF": 0.95859, 
            "PBC1": 0.963564, 
            "PBC2": 30.017896
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 104430837, 
            "distinct_read_pairs": 103222868, 
            "one_read_pair": 102080686, 
            "two_read_pair": 1115589, 
            "NRF": 0.988433, 
            "PBC1": 0.988935, 
            "PBC2": 91.503848
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 70264812, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 70264812, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 70264812, 
            "paired_qc_failed": 0, 
            "read1": 35132406, 
            "read1_qc_failed": 0, 
            "read2": 35132406, 
            "read2_qc_failed": 0, 
            "paired_properly": 70264812, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 70264812, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 206506968, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 206506968, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 206506968, 
            "paired_qc_failed": 0, 
            "read1": 103253484, 
            "read1_qc_failed": 0, 
            "read2": 103253484, 
            "read2_qc_failed": 0, 
            "paired_properly": 206506968, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 206506968, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 62562, 
        "Np": 0, 
        "N_opt": 62562, 
        "N_consv": 62562, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 170, 
            "corr_est_frag_len": 0.270974206533138, 
            "phantom_peak": 45, 
            "corr_phantom_peak": 0.1950672, 
            "argmin_corr": 1500, 
            "min_corr": 0.162194, 
            "NSC": 1.67068, 
            "RSC": 3.309086
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.598948357994
        }, 
        "rep1-pr1": {
            "FRiP": 0.593853231639
        }, 
        "rep1-pr2": {
            "FRiP": 0.593844974959
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.588570265803
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.12713327278, 
            "auc": 0.49515433439, 
            "ch_div": 0.139763814946, 
            "elbow_pt": 0.0, 
            "jsd": 0.898416836432, 
            "syn_auc": 0.508337620725, 
            "syn_elbow_pt": 0.512914373258, 
            "syn_jsd": 0.577286116283
        }
    ]
}
