{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 133442954, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 131050769, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.21, 
            "paired": 133442954, 
            "paired_qc_failed": 0, 
            "read1": 66721477, 
            "read1_qc_failed": 0, 
            "read2": 66721477, 
            "read2_qc_failed": 0, 
            "paired_properly": 112892164, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 84.6, 
            "with_itself": 129840848, 
            "with_itself_qc_failed": 0, 
            "singletons": 1209921, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.91, 
            "diff_chroms": 8753863, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 130176754, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 124658283, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.76, 
            "paired": 130176754, 
            "paired_qc_failed": 0, 
            "read1": 65088377, 
            "read1_qc_failed": 0, 
            "read2": 65088377, 
            "read2_qc_failed": 0, 
            "paired_properly": 102167555, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 78.48, 
            "with_itself": 122523087, 
            "with_itself_qc_failed": 0, 
            "singletons": 2135196, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.64, 
            "diff_chroms": 14641335, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 50997385, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 2772661, 
            "paired_opt_dupes": 669, 
            "dupes_pct": 0.054369
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 44771849, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 568051, 
            "paired_opt_dupes": 648, 
            "dupes_pct": 0.012688
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 50979157, 
            "distinct_read_pairs": 48209145, 
            "one_read_pair": 45581293, 
            "two_read_pair": 2495403, 
            "NRF": 0.945664, 
            "PBC1": 0.945491, 
            "PBC2": 18.266105
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 44746969, 
            "distinct_read_pairs": 44182877, 
            "one_read_pair": 43638722, 
            "two_read_pair": 533088, 
            "NRF": 0.987394, 
            "PBC1": 0.987684, 
            "PBC2": 81.860259
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 96449448, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 96449448, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 96449448, 
            "paired_qc_failed": 0, 
            "read1": 48224724, 
            "read1_qc_failed": 0, 
            "read2": 48224724, 
            "read2_qc_failed": 0, 
            "paired_properly": 96449448, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 96449448, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 88407596, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 88407596, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 88407596, 
            "paired_qc_failed": 0, 
            "read1": 44203798, 
            "read1_qc_failed": 0, 
            "read2": 44203798, 
            "read2_qc_failed": 0, 
            "paired_properly": 88407596, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 88407596, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 208955, 
        "Np": 0, 
        "N_opt": 208955, 
        "N_consv": 208955, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 145, 
            "corr_est_frag_len": 0.176839756018022, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.1735006, 
            "argmin_corr": 1500, 
            "min_corr": 0.1696065, 
            "NSC": 1.042647, 
            "RSC": 1.857483
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.288217194061
        }, 
        "rep1-pr1": {
            "FRiP": 0.284172945109
        }, 
        "rep1-pr2": {
            "FRiP": 0.284276858349
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.207637233558
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.236985400454, 
            "auc": 0.495863710982, 
            "ch_div": 0.117917427213, 
            "elbow_pt": 0.0, 
            "jsd": 0.634496160451, 
            "syn_auc": 0.507179618218, 
            "syn_elbow_pt": 0.182990668002, 
            "syn_jsd": 0.345887023737
        }
    ]
}
