/TFF-PPG/mapping_coverage/PX0587_CAACTA_10_lane_gembs
BACK
SAMPLE PX0587_CAACTA_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2071781147 |
100% |
285998431633 |
100% |
| Mapped |
2033547809 |
98.15 % |
280263430933 |
97.99 % |
| Passed |
757289822 |
36.55 % |
88824732883 |
31.06 % |
| NotPassed |
1276257987 |
61.60 % |
191438698050 |
66.94 % |
| |
|
|
|
|
| LowMAPQ |
847030372 |
40.88 % |
127054555800 |
44.42 % |
| MateUnmapped |
38233338 |
1.85 % |
5735000700 |
2.01 % |
| Duplicate |
91103606 |
4.40 % |
13665540900 |
4.78 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
9392010 |
0.45 % |
1408801500 |
0.49 % |
| |
|
|
|
|
| NotCorrectlyAligned |
328731999 |
15.87 % |
49309799850 |
17.24 % |
| Unmapped |
38233338 |
1.85 % |
5735000700 |
2.01 % |
Base Level Counts
| Bases |
# |
% |
| Total |
113517286650 |
100% |
| Passed |
81831113122 |
72.09 % |
| Trimmed |
2896077637 |
2.55 % |
| Clipped |
5148094351 |
4.54 % |
| Overlapping |
19544459416 |
17.22 % |
| LowQuality |
4097542124 |
3.61 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |