{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 88261096, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 87515716, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 99.16, 
            "paired": 88261096, 
            "paired_qc_failed": 0, 
            "read1": 44130548, 
            "read1_qc_failed": 0, 
            "read2": 44130548, 
            "read2_qc_failed": 0, 
            "paired_properly": 81316073, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 92.13, 
            "with_itself": 87168708, 
            "with_itself_qc_failed": 0, 
            "singletons": 347008, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.39, 
            "diff_chroms": 4942561, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 130013102, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 126232097, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.09, 
            "paired": 130013102, 
            "paired_qc_failed": 0, 
            "read1": 65006551, 
            "read1_qc_failed": 0, 
            "read2": 65006551, 
            "read2_qc_failed": 0, 
            "paired_properly": 109107434, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 83.92, 
            "with_itself": 124767100, 
            "with_itself_qc_failed": 0, 
            "singletons": 1464997, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.13, 
            "diff_chroms": 11420887, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 38068211, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 532217, 
            "paired_opt_dupes": 3444, 
            "dupes_pct": 0.013981
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 48591962, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 535380, 
            "paired_opt_dupes": 1721, 
            "dupes_pct": 0.011018
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 38066879, 
            "distinct_read_pairs": 37534679, 
            "one_read_pair": 37021807, 
            "two_read_pair": 495672, 
            "NRF": 0.986019, 
            "PBC1": 0.986336, 
            "PBC2": 74.690132
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 48585687, 
            "distinct_read_pairs": 48050759, 
            "one_read_pair": 47543477, 
            "two_read_pair": 492610, 
            "NRF": 0.98899, 
            "PBC1": 0.989443, 
            "PBC2": 96.513422
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 75071988, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 75071988, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 75071988, 
            "paired_qc_failed": 0, 
            "read1": 37535994, 
            "read1_qc_failed": 0, 
            "read2": 37535994, 
            "read2_qc_failed": 0, 
            "paired_properly": 75071988, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 75071988, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 96113164, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 96113164, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 96113164, 
            "paired_qc_failed": 0, 
            "read1": 48056582, 
            "read1_qc_failed": 0, 
            "read2": 48056582, 
            "read2_qc_failed": 0, 
            "paired_properly": 96113164, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 96113164, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 197998, 
        "Np": 0, 
        "N_opt": 197998, 
        "N_consv": 197998, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 150, 
            "corr_est_frag_len": 0.203505328607224, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.1903527, 
            "argmin_corr": 1500, 
            "min_corr": 0.1754014, 
            "NSC": 1.160226, 
            "RSC": 1.879703
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.660267921833
        }, 
        "rep1-pr1": {
            "FRiP": 0.638264319824
        }, 
        "rep1-pr2": {
            "FRiP": 0.638316412359
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.624305152576
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.114768559769, 
            "auc": 0.495312698747, 
            "ch_div": 0.240982836351, 
            "elbow_pt": 0.0, 
            "jsd": 0.801865309835, 
            "syn_auc": 0.503032671845, 
            "syn_elbow_pt": 0.412589102895, 
            "syn_jsd": 0.540199419197
        }
    ]
}
