{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 64939380, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 57484465, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 88.52, 
            "paired": 64939380, 
            "paired_qc_failed": 0, 
            "read1": 32469690, 
            "read1_qc_failed": 0, 
            "read2": 32469690, 
            "read2_qc_failed": 0, 
            "paired_properly": 56459515, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 86.94, 
            "with_itself": 56970645, 
            "with_itself_qc_failed": 0, 
            "singletons": 513820, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.79, 
            "diff_chroms": 280838, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 98701132, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 96181840, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.45, 
            "paired": 98701132, 
            "paired_qc_failed": 0, 
            "read1": 49350566, 
            "read1_qc_failed": 0, 
            "read2": 49350566, 
            "read2_qc_failed": 0, 
            "paired_properly": 77055364, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 78.07, 
            "with_itself": 94971565, 
            "with_itself_qc_failed": 0, 
            "singletons": 1210275, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.23, 
            "diff_chroms": 14544721, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 26183407, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 8391550, 
            "paired_opt_dupes": 3135, 
            "dupes_pct": 0.320491
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 34047307, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 359515, 
            "paired_opt_dupes": 1894, 
            "dupes_pct": 0.010559
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 26180810, 
            "distinct_read_pairs": 17790091, 
            "one_read_pair": 11823780, 
            "two_read_pair": 4246324, 
            "NRF": 0.679509, 
            "PBC1": 0.664627, 
            "PBC2": 2.784474
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 34044272, 
            "distinct_read_pairs": 33684905, 
            "one_read_pair": 33341128, 
            "two_read_pair": 333429, 
            "NRF": 0.989444, 
            "PBC1": 0.989794, 
            "PBC2": 99.994686
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 35583714, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 35583714, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 35583714, 
            "paired_qc_failed": 0, 
            "read1": 17791857, 
            "read1_qc_failed": 0, 
            "read2": 17791857, 
            "read2_qc_failed": 0, 
            "paired_properly": 35583714, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 35583714, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 67375584, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 67375584, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 67375584, 
            "paired_qc_failed": 0, 
            "read1": 33687792, 
            "read1_qc_failed": 0, 
            "read2": 33687792, 
            "read2_qc_failed": 0, 
            "paired_properly": 67375584, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 67375584, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 49924, 
        "Np": 0, 
        "N_opt": 49924, 
        "N_consv": 49924, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 170, 
            "corr_est_frag_len": 0.284180816423917, 
            "phantom_peak": 55, 
            "corr_phantom_peak": 0.2062558, 
            "argmin_corr": 1500, 
            "min_corr": 0.1427742, 
            "NSC": 1.990422, 
            "RSC": 2.227522
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.694324515017
        }, 
        "rep1-pr1": {
            "FRiP": 0.689490419724
        }, 
        "rep1-pr2": {
            "FRiP": 0.68944584435
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.680575766556
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.0669710708986, 
            "auc": 0.493185920245, 
            "ch_div": 0.389314182779, 
            "elbow_pt": 2.48560667211e-184, 
            "jsd": 0.901087015197, 
            "syn_auc": 0.496882293449, 
            "syn_elbow_pt": 0.550983624593, 
            "syn_jsd": 0.645533491608
        }
    ]
}
