/Martin Hirst/PX0681_GCACTT_3_lane_gembs/HCVC2CCXY_8_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 189276158 | 100.00 % | 94638079 | 100.00 % | 94638079 | 100.00 % |
| General Reads | 185100848 | 97.79 % | 93541320 | 98.84 % | 91559528 | 96.75 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 122618 | 0.06 % | 61826 | 0.07 % | 60792 | 0.06 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4052692 | 2.14 % | 1034933 | 1.09 % | 3017759 | 3.19 % |
| Bisulfite_reads C2T | 94025011 | 49.68 % | 47512488 | 50.20 % | 46512523 | 49.15 % |
| Bisulfite_reads G2A | 91198455 | 48.18 % | 46090658 | 48.70 % | 45107797 | 47.66 % |
| Concept | Value |
|---|---|
| Unique Fragments | 33911444 |
| Average Unique | 35.83 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 9838937711 | 34.43 % | 4976598403 | 34.82 % | 4862339308 | 34.03 % |
| Base Counts Overall C | 3917664196 | 13.71 % | 2025756183 | 14.18 % | 1891908013 | 13.24 % |
| Base Counts Overall G | 4677907977 | 16.37 % | 2256167028 | 15.79 % | 2421740949 | 16.95 % |
| Base Counts Overall T | 9953781236 | 34.83 % | 4935714326 | 34.54 % | 5018066910 | 35.12 % |
| Base Counts Overall N | 192408738 | 0.67 % | 96113989 | 0.67 % | 96294749 | 0.67 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9602991903721503 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 54975750 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 150 | 94638079 |
| 150 | 94638079 |
| Insert Size Histogram |
|---|
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