/Martin Hirst/PX0681_GCACTT_3_lane_gembs

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SAMPLE PX0681_GCACTT_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 644726194 100.00 % 322363097 100.00 % 322363097 100.00 %
General Reads 633037524 98.19 % 319192967 99.02 % 313844557 97.36 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 424536 0.07 % 213464 0.07 % 211072 0.07 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11264134 1.75 % 2956666 0.92 % 8307468 2.58 %
Bisulfite_reads C2T 321640800 49.89 % 162179580 50.31 % 159461220 49.47 %
Bisulfite_reads G2A 311821260 48.36 % 157226851 48.77 % 154594409 47.96 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 116265173
Average Unique 36.07 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 33569780477 34.48 % 16964663697 34.85 % 16605116780 34.11 %
Base Counts Overall C 13287851369 13.65 % 6875449762 14.12 % 6412401607 13.17 %
Base Counts Overall G 15877987913 16.31 % 7672439620 15.76 % 8205548293 16.86 %
Base Counts Overall T 33963417003 34.89 % 16837698399 34.59 % 17125718604 35.18 %
Base Counts Overall N 654618532 0.67 % 326576169 0.67 % 328042363 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.960806721699698
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 189078938



Mapping Quality

Mapping Quality Histogram
PX0681_GCACTT_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
PX0681_GCACTT_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HCVC2CCXY_7_2
HCVC2CCXY_8_2
HCTVVCCXY_4_2