/EXTERNAL CREST/K006471_1_lane_gembs/JKU049.Bisulfite-Seq.DNA_Methylation.JGAX00000016551.JKU049_WGBS

BACK

SAMPLE K006471_1_lane_gembs LANE JKU049.Bisulfite-Seq.DNA_Methylation.JGAX00000016551.JKU049_WGBS

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	414051549	100.00 %	414051549	100.00 %	0	0.00 %
General Reads	403306010	97.40 %	403306010	97.40 %	0	0.00 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	2784750	0.67 %	2784750	0.67 %	0	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	7960789	1.92 %	7960789	1.92 %	0	0.00 %
Bisulfite_reads C2T	202220958	48.84 %	202220958	48.84 %	0	0.00 %
Bisulfite_reads G2A	203869802	49.24 %	203869802	49.24 %	0	0.00 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	309277149
Average Unique	76.16 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	19907380404	49.57 %
Base Counts Overall C	8750491212	21.79 %
Base Counts Overall G	356137396	0.89 %
Base Counts Overall T	10730531080	26.72 %
Base Counts Overall N	418460161	1.04 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.847243994974919
Over Conversion Rate	NA

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
96	414051549