/EXTERNAL CREST/mapping_coverage/K006471_1_lane_gembs
BACK
SAMPLE K006471_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
574917689 |
100% |
38130339251 |
100% |
| Mapped |
574917689 |
100.00 % |
38130339251 |
100.00 % |
| Passed |
343556964 |
59.76 % |
30228038867 |
79.28 % |
| NotPassed |
231360725 |
40.24 % |
7902300384 |
20.72 % |
| |
|
|
|
|
| LowMAPQ |
82315629 |
14.32 % |
7902300384 |
20.72 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
149045096 |
25.92 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
16506747360 |
100% |
| Passed |
15144961281 |
91.75 % |
| Trimmed |
803409419 |
4.87 % |
| Clipped |
387861578 |
2.35 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
170515082 |
1.03 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |