/EXTERNAL CREST/methylation/K006471_1_lane_gembs

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SAMPLE K006471_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24951705 2137423 8.57 %
NonRefCpG 611144 9463 1.55 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006471_1_lane_gembs_coverage_refCpG.png ./IMG//K006471_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006471_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006471_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006471_1_lane_gembs_quality_refcpg.png ./IMG//K006471_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006471_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 12441330 27.91 % 950705 13.15 % 468250 45.08 % 8705 17.93 %
Intermediate (0.3-0.7) 15249756 34.21 % 1734235 23.99 % 349299 33.63 % 12779 26.32 %
Methylated (0.7-1) 16882733 37.88 % 4542664 62.85 % 221173 21.29 % 27066 55.75 %
Median Methylation 0.570 0.790 0.350 0.750