/EXTERNAL CREST/K006472_1_lane_gembs/JKU050.Bisulfite-Seq.DNA_Methylation.JGAX00000016554.JKU050_WGBS

BACK

SAMPLE K006472_1_lane_gembs LANE JKU050.Bisulfite-Seq.DNA_Methylation.JGAX00000016554.JKU050_WGBS

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	392598119	100.00 %	392598119	100.00 %	0	0.00 %
General Reads	382227914	97.36 %	382227914	97.36 %	0	0.00 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	2562046	0.65 %	2562046	0.65 %	0	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	7808159	1.99 %	7808159	1.99 %	0	0.00 %
Bisulfite_reads C2T	191698687	48.83 %	191698687	48.83 %	0	0.00 %
Bisulfite_reads G2A	193091273	49.18 %	193091273	49.18 %	0	0.00 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	294755508
Average Unique	76.60 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	18645980730	48.96 %
Base Counts Overall C	8232007630	21.62 %
Base Counts Overall G	341107149	0.90 %
Base Counts Overall T	10074033355	26.45 %
Base Counts Overall N	788888679	2.07 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.8476737616392827
Over Conversion Rate	NA

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
96	392598119