/EXTERNAL CREST/mapping_coverage/K006472_1_lane_gembs
BACK
SAMPLE K006472_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
547421407 |
100% |
35983569785 |
100% |
| Mapped |
547421407 |
100.00 % |
35983569785 |
100.00 % |
| Passed |
330679387 |
60.41 % |
28771739705 |
79.96 % |
| NotPassed |
216742020 |
39.59 % |
7211830080 |
20.04 % |
| |
|
|
|
|
| LowMAPQ |
75123230 |
13.72 % |
7211830080 |
20.04 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
141618790 |
25.87 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
15886645824 |
100% |
| Passed |
14486671128 |
91.19 % |
| Trimmed |
690566030 |
4.35 % |
| Clipped |
531979422 |
3.35 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
177429244 |
1.12 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |