/EXTERNAL CREST/methylation/K006472_1_lane_gembs

BACK

SAMPLE K006472_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24901764 1889483 7.59 %
NonRefCpG 632025 7878 1.25 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006472_1_lane_gembs_coverage_refCpG.png ./IMG//K006472_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006472_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006472_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006472_1_lane_gembs_quality_refcpg.png ./IMG//K006472_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006472_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11377409 25.79 % 770929 11.91 % 471284 44.21 % 7266 17.01 %
Intermediate (0.3-0.7) 15413583 34.93 % 1568456 24.22 % 362694 34.03 % 11407 26.70 %
Methylated (0.7-1) 17332007 39.28 % 4135981 63.87 % 231938 21.76 % 24048 56.29 %
Median Methylation 0.590 0.800 0.360 0.750