/EXTERNAL CREST/mapping_coverage/K006474_1_lane_gembs
BACK
SAMPLE K006474_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
576876293 |
100% |
40073172282 |
100% |
| Mapped |
576876293 |
100.00 % |
40073172282 |
100.00 % |
| Passed |
348293076 |
60.38 % |
31315864060 |
78.15 % |
| NotPassed |
228583217 |
39.62 % |
8757308222 |
21.85 % |
| |
|
|
|
|
| LowMAPQ |
86706022 |
15.03 % |
8757308222 |
21.85 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
141877195 |
24.59 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
17610064676 |
100% |
| Passed |
16217198494 |
92.09 % |
| Trimmed |
811529419 |
4.61 % |
| Clipped |
427622992 |
2.43 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
153713771 |
0.87 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |