/EXTERNAL CREST/mapping_coverage/K006473_1_lane_gembs
BACK
SAMPLE K006473_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
452395907 |
100% |
29142069992 |
100% |
| Mapped |
452395907 |
100.00 % |
29142069992 |
100.00 % |
| Passed |
285621232 |
63.14 % |
23250053960 |
79.78 % |
| NotPassed |
166774675 |
36.86 % |
5892016032 |
20.22 % |
| |
|
|
|
|
| LowMAPQ |
61375167 |
13.57 % |
5892016032 |
20.22 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
105399508 |
23.30 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
13720629312 |
100% |
| Passed |
12509207211 |
91.17 % |
| Trimmed |
599647781 |
4.37 % |
| Clipped |
445116164 |
3.24 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
166658156 |
1.21 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |