/EXTERNAL CREST/methylation/K006473_1_lane_gembs

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SAMPLE K006473_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24795250 1143031 4.61 %
NonRefCpG 675953 4040 0.60 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006473_1_lane_gembs_coverage_refCpG.png ./IMG//K006473_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006473_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006473_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006473_1_lane_gembs_quality_refcpg.png ./IMG//K006473_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006473_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10793711 25.01 % 413742 10.00 % 491566 43.99 % 3767 15.40 %
Intermediate (0.3-0.7) 15727019 36.44 % 1003080 24.24 % 390222 34.92 % 6539 26.74 %
Methylated (0.7-1) 16636729 38.55 % 2720680 65.76 % 235626 21.09 % 14152 57.86 %
Median Methylation 0.580 0.810 0.360 0.760